Protein Info for PFLU_RS11690 in Pseudomonas fluorescens SBW25

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 57 to 77 (21 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 112 to 112 (1 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 147 to 170 (24 residues), see Phobius details amino acids 178 to 198 (21 residues), see Phobius details amino acids 219 to 241 (23 residues), see Phobius details amino acids 256 to 279 (24 residues), see Phobius details amino acids 286 to 305 (20 residues), see Phobius details amino acids 311 to 333 (23 residues), see Phobius details amino acids 344 to 368 (25 residues), see Phobius details amino acids 374 to 392 (19 residues), see Phobius details PF07690: MFS_1" amino acids 27 to 354 (328 residues), 111.6 bits, see alignment E=2e-36 amino acids 228 to 399 (172 residues), 42.9 bits, see alignment E=1.5e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2381)

Predicted SEED Role

"major facilitator superfamily MFS_1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K978 at UniProt or InterPro

Protein Sequence (408 amino acids)

>PFLU_RS11690 MFS transporter (Pseudomonas fluorescens SBW25)
MNDCVAQPSVHSQAEPTDPAWMAVFSLAMGVFGLLTAEYLPASLLTPMAMDLGVSEALAG
QAVTVTAVVALFAGLLVPGLTRGIDRRVVLLGFSLLMIASNLLVALSSSLAVLLLMRILL
GVALGGFWSMAAAVAMRLVPAALLPRALSIIFSGIAVGTVVAVPLGSFLGGLYGWRSAFV
AAAAVGVITLAFQLFTLPRLAPTGTARLRTILDVLRRPGIAIGMFGCVLVHTGHFALFTY
IRPFLESTTGVGTEGLALMLLGFGAANFVGTLLAGWMLVRYPRGTLVLMPILVGVAALAL
VLLPASLPSQALLLALWGMAFGGVPVAWSNWVARAVPDQAESAGGMVVASVQSAIAAGAA
GGGVMFSLSGIDGVFIGAGVLMLLAALLIALRVQVPRQHAAAGKALQV