Protein Info for PFLU_RS11670 in Pseudomonas fluorescens SBW25

Annotation: SDR family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 PF00106: adh_short" amino acids 14 to 199 (186 residues), 168.4 bits, see alignment E=2.8e-53 PF08659: KR" amino acids 15 to 176 (162 residues), 46.1 bits, see alignment E=1.1e-15 PF01370: Epimerase" amino acids 16 to 105 (90 residues), 22.5 bits, see alignment E=1.4e-08 PF13561: adh_short_C2" amino acids 22 to 254 (233 residues), 190.1 bits, see alignment E=9.4e-60

Best Hits

Swiss-Prot: 43% identical to XDH_CAUVN: D-xylose 1-dehydrogenase (xylB) from Caulobacter vibrioides (strain NA1000 / CB15N)

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2376)

Predicted SEED Role

"Putative oxidoreductase in arabinose utilization cluster" in subsystem L-Arabinose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K974 at UniProt or InterPro

Protein Sequence (255 amino acids)

>PFLU_RS11670 SDR family oxidoreductase (Pseudomonas fluorescens SBW25)
MSTQHAVYPDLEGKTVLISGGASGIGEFMVRAFAAQGAKVGFVDRAQSQGERLAALLSSR
GHTVEFVNCDITDEIAYKAAIGRFEHSLGPITVLVNNAANDVRHTLEEVDSEMFDRLISV
NLKHAFLAAKAVVPMMKGAGGGAIINLGSVGWMMASAGYPVYAASKAAAHGMTRALAREL
GPSRIRVNTLVPGWVMTEKQLAMWVDDAAKELISRSQCLPGSVLPEHIANMALFLASDAS
AMCSAQNFIVDGGWV