Protein Info for PFLU_RS11365 in Pseudomonas fluorescens SBW25

Annotation: allantoin permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 transmembrane" amino acids 32 to 54 (23 residues), see Phobius details amino acids 60 to 82 (23 residues), see Phobius details amino acids 102 to 125 (24 residues), see Phobius details amino acids 138 to 160 (23 residues), see Phobius details amino acids 167 to 185 (19 residues), see Phobius details amino acids 197 to 217 (21 residues), see Phobius details amino acids 238 to 262 (25 residues), see Phobius details amino acids 282 to 305 (24 residues), see Phobius details amino acids 325 to 345 (21 residues), see Phobius details amino acids 351 to 376 (26 residues), see Phobius details amino acids 397 to 416 (20 residues), see Phobius details amino acids 434 to 451 (18 residues), see Phobius details PF02133: Transp_cyt_pur" amino acids 18 to 439 (422 residues), 141.4 bits, see alignment E=2e-45

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2315)

Predicted SEED Role

"Cytosine/purine/uracil/thiamine/allantoin permease family protein" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K8F4 at UniProt or InterPro

Protein Sequence (468 amino acids)

>PFLU_RS11365 allantoin permease (Pseudomonas fluorescens SBW25)
MPQMSRQDPLIEHHTVDYVPLAERHGKARDLFTLWFSTNIAPLPIVTGAMVAQVFHLNLA
WGLLAIALGHLLGGIVIALASAQGPRMGIPQMVQSRGQFGRYGALLIVFFAALIYIGFFI
SNIVLAGKSIVGIVPSVPVPASILIGALSATAIGVIGYRFIHTLNRIGTWVMGSALLAGF
IYIFAHDLPADFLTRGGFNAAGWLATVSLGVIWQISFSPYTSDYSRYLPADIGITRPFLA
TYLGATLGTILSFAFGLVAALATPEGTEAMVAVKHATGWLGPILMVLFLLNIISHNALNL
YGAVLSIITSVQTFASHWTPSIKVRVALSGVVLAGCCVVALGASADFISQFIGLILALLL
VLVPWASINLIDFYIIKRGVYDIASIFQADGGVYGRFNLHAIVAYFIGIIVQLPFANTSL
YVGPWANLVEGADLSWLVGLVVTCPLYYCLATRQHTQKVRAARLGYTD