Protein Info for PFLU_RS10940 in Pseudomonas fluorescens SBW25

Annotation: ATP-binding cassette domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 698 transmembrane" amino acids 330 to 348 (19 residues), see Phobius details amino acids 354 to 374 (21 residues), see Phobius details amino acids 386 to 405 (20 residues), see Phobius details amino acids 433 to 455 (23 residues), see Phobius details amino acids 462 to 480 (19 residues), see Phobius details amino acids 486 to 504 (19 residues), see Phobius details amino acids 511 to 533 (23 residues), see Phobius details amino acids 554 to 582 (29 residues), see Phobius details amino acids 626 to 650 (25 residues), see Phobius details amino acids 668 to 686 (19 residues), see Phobius details PF00005: ABC_tran" amino acids 55 to 202 (148 residues), 119.7 bits, see alignment E=2.3e-38 PF13304: AAA_21" amino acids 171 to 236 (66 residues), 27.2 bits, see alignment E=5.6e-10 PF00528: BPD_transp_1" amino acids 525 to 680 (156 residues), 90.6 bits, see alignment E=1.7e-29

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2225)

Predicted SEED Role

"L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1)" in subsystem Choline and Betaine Uptake and Betaine Biosynthesis (TC 3.A.1.12.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K931 at UniProt or InterPro

Protein Sequence (698 amino acids)

>PFLU_RS10940 ATP-binding cassette domain-containing protein (Pseudomonas fluorescens SBW25)
MTLIQTSLATARIDSSQQRAQPSSDHANEADVVLELRDVTKAYLRKGSSVLPAVSNVSLK
VRRGEVLCLMGTSGSGKSTLLRHINRLIEPSSGDVLIEGQTISGLSHKALRDLRSRRIGM
VFQHFGLLPHRTVLDNVALPLELRGEPESIRHAAAILQLRAVGLEGWGEHYPHELSGGMQ
QRVGLARALVTDPDILLMDEPFSALDPTIRRDLQSHFLALVHERGISTLLVTHDPAEAIR
LADRIAVLRRGRLVQLGTPKQLLEHPVDAEVADFFRDFNSTHTPLHSVDSVGLQPPETAP
RGPHVQPGLRGWQALLLGPAALAARGKGGLFWLGFAVELAALAALAQGIATSSWLAILAA
VMVFAASRFTALSLSRQPVLRNVSGWGLPLAVLVVSQALVIWRVVTPDATGVLLQFPVNR
QALLLAAQSIDEFIGWSQVTFEGAFVGVIVAVRTVIEGIENLLGWLPWPVSALTLVFLAW
RSAGLPLALTSSAALLYIGLFGFWERTIATLALVGSSVLIALVIGVPTGILLAKRPLLRR
VITPLLDVMQTLPTFVYLIPAVAFFSVGKTPAVIATVIFALAPMIRLTSLGIQEVAKDAV
EAAVAHGASPWQTLIKVQLPLARRSLLLGINQTIVMSLSMVVVAALIGAGGLGYDVMTAL
RNIKGGEGVLAGVAIVLCALIPDRIIQSSLRKQDHRHN