Protein Info for PFLU_RS10930 in Pseudomonas fluorescens SBW25

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 548 PF00005: ABC_tran" amino acids 24 to 182 (159 residues), 99.6 bits, see alignment E=2e-31 amino acids 299 to 448 (150 residues), 115.6 bits, see alignment E=2.3e-36 PF08352: oligo_HPY" amino acids 500 to 527 (28 residues), 17.4 bits, see alignment (E = 3.6e-06)

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2223)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K8D4 at UniProt or InterPro

Protein Sequence (548 amino acids)

>PFLU_RS10930 ABC transporter ATP-binding protein (Pseudomonas fluorescens SBW25)
MTLLSVENLRIALPAGADRSHALYDLSLQLRSGECLCVVGESGSGKSMLAKALLRQLPTP
LSVESGRLVFRDEDLAKLSETAMRQLRGRDISMVFQEPMSALNPLLRVGEQIDETLRAHG
VKSAQERRRRVVELLGYVGLPEPERLRLVYPFELSGGQRQRVVIAMALAFDPSLLIADEP
TSALDVTTQAQIIDLLRKIQQDKGMSLLFITHDFAVVEAIADRVLVLEKGQLVEQGSAHQ
VLRKPQALYTQQLLAAVWAQPRAPRTTVDGSVVLKAEQLNKVFRSNSGWWRKRATQALAQ
VQLTLREGETLGIVGESGSGKSTLGRCLVRLLRADSGQIQWLGQDVTALSEGRLRALRSD
VQMIFQDPFASLNPRQTVGRIVMTGPLVQGHSKAEAERRTRSFLALVGLPATAFERYPHE
FSGGQRQRIGIARALAVEPKILIADECVSALDALIQVQILELLEDLQRRLKLSIVFITHD
LRVAARLCDRIAVMQGGHVVEQGEAATLLVHPQHAYTQTLLRGFSRTVLPSTVTPQNLEF
KEACPTHG