Protein Info for PFLU_RS10210 in Pseudomonas fluorescens SBW25

Annotation: oligosaccharide flippase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 43 to 68 (26 residues), see Phobius details amino acids 76 to 103 (28 residues), see Phobius details amino acids 123 to 142 (20 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 235 to 250 (16 residues), see Phobius details amino acids 261 to 280 (20 residues), see Phobius details amino acids 300 to 321 (22 residues), see Phobius details amino acids 333 to 355 (23 residues), see Phobius details amino acids 366 to 385 (20 residues), see Phobius details amino acids 387 to 406 (20 residues), see Phobius details amino acids 418 to 436 (19 residues), see Phobius details amino acids 442 to 463 (22 residues), see Phobius details PF03023: MurJ" amino acids 28 to 409 (382 residues), 148 bits, see alignment E=5.4e-47 PF13440: Polysacc_synt_3" amino acids 70 to 324 (255 residues), 39.7 bits, see alignment E=5.6e-14 PF14667: Polysacc_synt_C" amino acids 333 to 464 (132 residues), 30.7 bits, see alignment E=4.9e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2072)

Predicted SEED Role

"Extracellular Matrix protein PslK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K538 at UniProt or InterPro

Protein Sequence (469 amino acids)

>PFLU_RS10210 oligosaccharide flippase family protein (Pseudomonas fluorescens SBW25)
MLGSAVWLTLATLLGLCLGFAREWLLVAAWGAGERSDAFLIALFLPEALRMSLAGGVLSA
AALPLYLARKDDERLGWLTVLFPALLLIALVTSLLLTLLAPWLVQLLGPGLAASATALAS
NNLQIVAWCVPGLMLHALFSIPLQASERFVLAGLGSLLFNLPPVTYLALAGTATQPHSLA
LACLAGSLLMPLALLPSMWRQGWRPWHWQLSLAPLRELGQRIGPLLLSNGASQGLALIER
LVASLLGEGAVTWVNLARKLMNLPLIALMSLNQVLLGMMSRRQGAERLALLKRGLETASM
LTLPAGVGLVAAAPSLVALLLPAQSLDSPLPLLLAWFAVPLVFGAWNALLARYAYAAGDT
RQPLRCELLGSLVNVLLLGVLPFVFGLAGIPLAALAGVLCTALLLMQRQGLLGALPWARQ
WLLSGVLMGAAALALFRIEGVWLQLGLSTLAGAVVLLGMGLWLKPWRKA