Protein Info for PFLU_RS10030 in Pseudomonas fluorescens SBW25

Annotation: metal ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 transmembrane" amino acids 23 to 45 (23 residues), see Phobius details amino acids 55 to 75 (21 residues), see Phobius details amino acids 81 to 100 (20 residues), see Phobius details amino acids 112 to 134 (23 residues), see Phobius details amino acids 155 to 174 (20 residues), see Phobius details amino acids 186 to 209 (24 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details amino acids 241 to 263 (23 residues), see Phobius details amino acids 269 to 289 (21 residues), see Phobius details PF00950: ABC-3" amino acids 25 to 286 (262 residues), 176.1 bits, see alignment E=1e-55 PF01032: FecCD" amino acids 63 to 284 (222 residues), 38.5 bits, see alignment E=7.2e-14

Best Hits

KEGG orthology group: K09816, zinc transport system permease protein (inferred from 100% identity to pfs:PFLU2042)

Predicted SEED Role

"ABC transporter in pyoverdin gene cluster, permease component" in subsystem Siderophore Pyoverdine

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K917 at UniProt or InterPro

Protein Sequence (299 amino acids)

>PFLU_RS10030 metal ABC transporter permease (Pseudomonas fluorescens SBW25)
MSYEAFRLMVQGWASSGYLPEALAYGFVVNALLAGLLIGPVLGGLGTLVVVKRFAFFSEA
VGHAALTGVAVGILLGEPYTGPYGSLFGYCLLFGILLNYLRNRTGLAPDTLIGVFLSVSL
ALGASLLLILAGKINVHILENVLFGSVLTVNGNDLAVLAIVGALVMALALPLYNRIMLAS
FNPQLAAVRGVAVKTLDYLFVILVTLITVAAVKVIGAILVGALLVIPAAAARLLSQSLKG
FFWVSVVIATVSTLCGILLPIIFDLPIPSGAAIILVAGIAFALAAIARGTVPSLKGNLG