Protein Info for PFLU_RS09925 in Pseudomonas fluorescens SBW25

Annotation: LysE family translocator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 41 to 64 (24 residues), see Phobius details amino acids 71 to 93 (23 residues), see Phobius details amino acids 114 to 137 (24 residues), see Phobius details amino acids 148 to 174 (27 residues), see Phobius details PF01810: LysE" amino acids 16 to 202 (187 residues), 105.5 bits, see alignment E=1.3e-34

Best Hits

KEGG orthology group: K05835, threonine efflux protein (inferred from 100% identity to pfs:PFLU2019)

Predicted SEED Role

"Threonine efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K8A2 at UniProt or InterPro

Protein Sequence (205 amino acids)

>PFLU_RS09925 LysE family translocator (Pseudomonas fluorescens SBW25)
MFDISAVVTVLTVSAVGVMIPGPSFVAVVHKAVSGCRTDAIAFVMGIVAVNLIWATCAIF
GIGMVFKLFPWLAAAVKIAGGAYLVWFGLRLIIASRTAGAKPQMKPKSTGLRAAFFQGAA
MNTMNPKSIAFFAAIFSSAAPAHVSTATFLAMLAAVGATALCWYGLVALVLSHATIAKAY
QNAKRTVDRICGVLLIGLGVRQITR