Protein Info for PFLU_RS09910 in Pseudomonas fluorescens SBW25

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 transmembrane" amino acids 23 to 43 (21 residues), see Phobius details amino acids 61 to 83 (23 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 123 to 143 (21 residues), see Phobius details amino acids 151 to 174 (24 residues), see Phobius details amino acids 188 to 208 (21 residues), see Phobius details amino acids 249 to 270 (22 residues), see Phobius details amino acids 282 to 303 (22 residues), see Phobius details amino acids 315 to 334 (20 residues), see Phobius details amino acids 340 to 360 (21 residues), see Phobius details amino acids 371 to 394 (24 residues), see Phobius details amino acids 406 to 425 (20 residues), see Phobius details PF07690: MFS_1" amino acids 31 to 391 (361 residues), 159.4 bits, see alignment E=5.8e-51

Best Hits

Swiss-Prot: 45% identical to NICT_PSEPK: Putative metabolite transport protein NicT (nicT) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU2015)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K8A0 at UniProt or InterPro

Protein Sequence (432 amino acids)

>PFLU_RS09910 MFS transporter (Pseudomonas fluorescens SBW25)
MTILSDAKIAVGNIPSEQLYRKVSWRIIPLLMACYFFACLDRQNISFAKLQMQVDLSISD
AVYGLGAGIFFIGYVLFEIPSNLLLPRVGARKTIARILILWGLTSAAMMFVNSIGMFYCL
RFLLGVFEAGFAPGMIFYLTYWYGEARMARALALVLMAGPISGVLGGPLSALLMTACDGM
MGLSGWQWMFFYEGIPCVFLGFVVWNVLADRPDTAKWLSPSEKDLLETHTRQPGAKHHSF
KHVLGDPRIYVMAGAYFCLICGIYTVNFWLPSILKENGVSNTMHIGLLTSIPYLGAIASM
FLVGKSSDKHQERRWHSAVPAVVAAICLGVATYLSSSIVASVLFMIVATMMMYAAYTVFW
SIPSKYLKGDVAAGGIALVNTIGLLGGFFSPTIIGWATSVTGSLHAGLYVMVGLLAVGAL
LLSLIKLPSLSK