Protein Info for PFLU_RS09680 in Pseudomonas fluorescens SBW25

Annotation: TIGR03759 family integrating conjugative element protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR03759: integrating conjugative element protein, PFL_4693 family" amino acids 42 to 236 (195 residues), 264.3 bits, see alignment E=2.8e-83

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1964)

Predicted SEED Role

"probable exported protein STY4558"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K775 at UniProt or InterPro

Protein Sequence (239 amino acids)

>PFLU_RS09680 TIGR03759 family integrating conjugative element protein (Pseudomonas fluorescens SBW25)
MNRALLPAVVCLVSLLATGAAMGNPVTTQSRTQDTQSAPLGRSDSEQAASWGLTEQEWTR
FEQIQAGPRGFWSPNLDPLTALGVEAETDQERQRYAELQVALEAKRAERELAYQNAYTTA
WAKLFPGLLPIQGMASPPPASSSAAPRQALFVEDHCPACTAEAQRLQSSDTAFDIYLVGS
QGEDERVRSWARQADIDPAKVQRRQITLNHDRGRWLSLGALGSLPATFQQVNGQWQRLD