Protein Info for PFLU_RS09660 in Pseudomonas fluorescens SBW25

Annotation: TIGR03747 family integrating conjugative element membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 242 transmembrane" amino acids 21 to 51 (31 residues), see Phobius details amino acids 124 to 145 (22 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 193 to 212 (20 residues), see Phobius details amino acids 218 to 238 (21 residues), see Phobius details TIGR03747: integrating conjugative element membrane protein, PFL_4697 family" amino acids 14 to 242 (229 residues), 314.7 bits, see alignment E=1.9e-98 PF14348: DUF4400" amino acids 50 to 239 (190 residues), 228.3 bits, see alignment E=3.3e-72

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1960)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K771 at UniProt or InterPro

Protein Sequence (242 amino acids)

>PFLU_RS09660 TIGR03747 family integrating conjugative element membrane protein (Pseudomonas fluorescens SBW25)
MTSAQRPPPQPIQRPGLIVSAISLVLRIIGLLIASLLFSILVEFVGLLLFWGDQGWRHSQ
AMLSSELGWLSEHFKSSLILQRPGQTVVQWLDFLHQWLLVNTGFADFAQQARMSSQDNGS
WGGINQLYVSIEDFVLAAVYVSFTFVVRLSILALATPLFLLAMFTGFIDGLMRRDLRKFG
AGRESSFVYHRAKRAVMPLLSVPWILYLSLPFSLNPMAVFLPCAVMLGVAMAITTATFKK
YL