Protein Info for PFLU_RS08985 in Pseudomonas fluorescens SBW25

Annotation: DUF599 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 245 signal peptide" amino acids 7 to 8 (2 residues), see Phobius details amino acids 25 to 26 (2 residues), see Phobius details transmembrane" amino acids 9 to 24 (16 residues), see Phobius details amino acids 74 to 94 (21 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 172 to 181 (10 residues), see Phobius details amino acids 188 to 189 (2 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details PF04654: DUF599" amino acids 13 to 223 (211 residues), 231 bits, see alignment E=5e-73

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1826)

Predicted SEED Role

"FIG00953885: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K6N3 at UniProt or InterPro

Protein Sequence (245 amino acids)

>PFLU_RS08985 DUF599 family protein (Pseudomonas fluorescens SBW25)
MSFVETNQIHLLAALWFILCWGGYTRYATWKARDTACLASVLHLYREDWMRRMLLRDNRI
ADASVIGNLERNASFFASSTLIILAGILTVLGASERAVSLLADIPMVQQASQGMSEIKLL
CLALVFVYAFFTFSWCMRQYNFAAVLVGSAPMIGERHVSEQERKAFALRAARVISMAANQ
FNFGLRAYYFGMTMLAWFVSPWLFMLMSSGVVLVLYRREFHSDVLQVMVYTQTDTSPPEA
VKEAV