Protein Info for PFLU_RS08845 in Pseudomonas fluorescens SBW25

Annotation: urea transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 29 to 58 (30 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details amino acids 160 to 183 (24 residues), see Phobius details amino acids 189 to 207 (19 residues), see Phobius details amino acids 213 to 230 (18 residues), see Phobius details amino acids 237 to 255 (19 residues), see Phobius details amino acids 261 to 279 (19 residues), see Phobius details PF03253: UT" amino acids 11 to 272 (262 residues), 171 bits, see alignment E=1.7e-54

Best Hits

KEGG orthology group: K08717, urea transporter (inferred from 100% identity to pfs:PFLU1798)

Predicted SEED Role

"Eukaryotic-type low-affinity urea transporter" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K656 at UniProt or InterPro

Protein Sequence (291 amino acids)

>PFLU_RS08845 urea transporter (Pseudomonas fluorescens SBW25)
MHNQTCPDWAEALLNGFSQIFLQRHPLCGLLCLLAILIGAPALLGGALLGGVAGLLTAQR
RGYPKVERQAGLYSYNGVLLGVLISQHFAWSALLPPLILACGGLSAILTRHWLKHASQPD
DLPAYTAPFVGLGWLLLGTVPPSTFAVTESDTLAVLTAPFTGLAQIMLLDQPVAGASIAL
GLWLANRRACVWALIGASAGMLIALWLQEPASALLGLHGYNPALAALALSQVRRQPWLPL
LGLLLAILLTPGFAALHLPALTAPFILACWLVRAGARVLRKPRMDRPFESP