Protein Info for PFLU_RS07925 in Pseudomonas fluorescens SBW25

Annotation: fimbrial biogenesis outer membrane usher protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 858 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF13954: PapC_N" amino acids 36 to 186 (151 residues), 86.9 bits, see alignment E=1.3e-28 PF00577: Usher" amino acids 203 to 755 (553 residues), 557.6 bits, see alignment E=3.7e-171

Best Hits

KEGG orthology group: K07347, outer membrane usher protein (inferred from 100% identity to pfs:PFLU1610)

Predicted SEED Role

"outer membrane usher protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K4X4 at UniProt or InterPro

Protein Sequence (858 amino acids)

>PFLU_RS07925 fimbrial biogenesis outer membrane usher protein (Pseudomonas fluorescens SBW25)
MPRSFPFMRCRAMKAFGCPLVAAAALHLAPAHAGYEFDASFLEIGGGQSSAAVKQQVSAM
SDGQLPGIYRVDVVLNERSVEQRDVRFIRAIGSQERSSTGLFPCLDVEFFRAQGLADTAL
QNRSDADTTCIAFDQGLAGVSYDYDFNRQILSIEIPQAYLGSIPFEVRRRQWSNGEQVAF
TNYSFTGSTVESDAGRRQDQFGSLRSGINAGAWRLRNFSTWQKGSTTPGRWESLETYAQR
DMGNMMAIATLGDATTEGDLFDAIPYRGLGIASDLDMLPDQAREFAPVIRGIANGRSRVI
IRQRGYVIHEQWVPSGPFALTDLYPTASNGDIEVTVEGPDGQRQVYTQSFSSVPYMLREG
QQSYSVFAGQYRPAQSSFVQQTPTFIQASLRRGLSGSTTLFGGSLLSDQYNAGLLGFAHD
FAGFGAISVDVTHARSDGMGREKTTSSGQSFRFRYSKSLAATDTNFSLIGYRYSTGGYYS
FNEALNSRNAGQTLDTYRSGHMKSNFTANVSQQLGGYGGVYANVSKTAYWDKSKADTSIQ
LGYSTSVGDVSYSLGLAMSKGANTDDRSLSLSISMPLGGTRSQRVTANLNQSARGSASRT
ATLSGNAFEDDTLAYSAGVSQQVNGVQRQTGGTFAAQYDAPNAIVRGAYNETSGSRQLDM
GIEGSVVAYDSNLMFSQPLGETNVIVATPGAADVGISNKRGVRTNSNGYTVVPQALPYRK
NRVSLDTQSMPADVDIAEPVQEVTPNRGAFVLADFDTRRGQRILFRISDTRGVAAPFAAR
AELFAPDGRALGNTLVADKGRAFLTGVPPEARLLISVDGQAWCSRELTLDETKPAEGGIT
QLNIQCERAAGGSGAKDS