Protein Info for PFLU_RS07830 in Pseudomonas fluorescens SBW25

Annotation: terminase ATPase subunit family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 585 PF06056: Terminase_5" amino acids 10 to 67 (58 residues), 86.6 bits, see alignment 1.3e-28 PF03237: Terminase_6N" amino acids 161 to 381 (221 residues), 212.5 bits, see alignment E=8.7e-67 PF17289: Terminase_6C" amino acids 410 to 568 (159 residues), 155.5 bits, see alignment E=1.7e-49

Best Hits

Swiss-Prot: 60% identical to VPP_BPP2: Terminase, ATPase subunit (P) from Escherichia phage P2

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1590)

Predicted SEED Role

"Phage terminase, ATPase subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K5I4 at UniProt or InterPro

Protein Sequence (585 amino acids)

>PFLU_RS07830 terminase ATPase subunit family protein (Pseudomonas fluorescens SBW25)
MNAIVELPTDHRRHAKHLYWQGYRVCEIAELIGEKEKTLHSWKARDEWDRATPLERIQAA
TEARLVQLILKDPKSGSDYKEIDLLHRQLERQARIQRFNDGGTETELNPNLAKRNEGPKK
APKRNEFDEEHIEKLTEAFIDGCFGYQLDWYKAGNQRTRAILKSRQIGATYYFAREALID
ALTTGRNQIFLSASKNQAHIFKAYIQAFAREVVGVELTGDPIILGNGAELHFLGTNARTA
QGYHGNFYFDEFFWTFKFKELNKVASGMAMQKQYRRTYFSTPSSMAHEAYTFWTGERFNK
GKPASQRVKIDVSHNALQQGRLCEDRVWRQIVTILDAEDRGCDLFDLDELRQEYDAEAFQ
NLLMCQFIDDGASIFPLAMLQPCMVDSWDLWAQDYKPFAARPFGDRQVWVGYDPAESGDS
AGLVVIAPPMVPGGKFRVLEKHQFRGMDFAAQAEAIRQVTKRYWVTYIGIDITGMGSGVA
QLVKQFFPNITAFSYSPEVKTRLVLKAYDVIKNGRLEFDAGWTDLAQSLMAIRKTITASG
RQFTYTAGRTDETGHADLAWATFHALHNEPLEGQTTSNTGFMESY