Protein Info for PFLU_RS07125 in Pseudomonas fluorescens SBW25

Annotation: autotransporter outer membrane beta-barrel domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 729 PF03212: Pertactin" amino acids 305 to 418 (114 residues), 84.5 bits, see alignment E=5.7e-28 TIGR01414: outer membrane autotransporter barrel domain" amino acids 321 to 729 (409 residues), 304 bits, see alignment E=1e-94 PF03797: Autotransporter" amino acids 466 to 707 (242 residues), 179.6 bits, see alignment E=1e-56

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1444)

Predicted SEED Role

"autotransporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KDS9 at UniProt or InterPro

Protein Sequence (729 amino acids)

>PFLU_RS07125 autotransporter outer membrane beta-barrel domain-containing protein (Pseudomonas fluorescens SBW25)
MPVALAATQVKALNIYPGQNVVIDADTLVDRYHVTEATLTSNGARILGVKAYDSTFTMSG
GTVKNTAGTEVGVALYGSKGTVRDASIYSGGAEGMIVGTNSDRGSAVEVFDSDVTGATDG
IVLSGSSTLALHNTQVSGANAGLRAYDGQLTTQGGRIYGGTNGIVAYRLPTVDNPSVLNL
NQTEVVGGIGAAILVDYPGGTEININNGTTLVGGNGNMLELAHGGAADVNVSNTTLGGNI
QVGKDSALDMNMDFAFMNGDIINSGGSANVGLNNGSVLTGRLDNVDKLSVNSDATWVMVD
GQQALNTLSMNGGNVKFGESGAFYKLDVANLSGTGGTFIMKADFGSLTGDFLNVTGTSAG
HHQLLLAATGADPLNERLHMVHTADGVANFSLVGGRVDRGTYSYDLTADNQNQDWYLDPD
SKVISPSTNSVLALFNAAPSVLLGEMTNLRTRMGELRFNGGQTAGLWTRAYGNKYEVSND
KTGLGYNQTQRGFTLGADAPLEAGDGQWLIGAMAGHSQSDLDLNLGSKATINSYYVGGYA
TWLDSESGFYFDGVLKFNRLHNESNVAMSDGKKSKGNYTQNATGASAEFGRHITLDDGYF
VEPYGQLAAVITQAQSYTLDNGLSAKGDRSSSVIGELGVTAGNNIQLDSGGVLQPYLKAA
VTHEFDQSNKVFVNDNSFNNDLSGSRLKLGAGMAMSVSQNLSMHADLERSVGKNIKQPLG
VNVGLRYAF