Protein Info for PFLU_RS06790 in Pseudomonas fluorescens SBW25

Annotation: J domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 536 transmembrane" amino acids 360 to 379 (20 residues), see Phobius details amino acids 388 to 409 (22 residues), see Phobius details amino acids 448 to 475 (28 residues), see Phobius details amino acids 499 to 520 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1376)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KBN0 at UniProt or InterPro

Protein Sequence (536 amino acids)

>PFLU_RS06790 J domain-containing protein (Pseudomonas fluorescens SBW25)
MECWTVLQLPEDADERTIKRTYARLLKNCRPDDDAAGFQRLREAYEQALAYARWRADCEE
EQESVQAPVVEATYGNLNDLAELMNISPVSPAPFQTPAPDPAQALLDGLNAHNLDERWAQ
ARQQNCADAFQAGLLRHCFEAPGERSAIARWAANHLEWLTPWQQVAMTPWQHDALSGELL
QDYRRTLQELLEQKAEREFITQLTQYNNQPWLRVFDLQQQWQRILLQLLHDTQWSVPLFE
RVCQAFGWDDQKGVYPEPAWMWRELVSRCEQESFFVNLQDTANDTRRTSADALAARLLLT
PMSVKEQYRLVAGFDENAWNATRHLSEVLTWRYPDLLERLPDSHVFFWRKFLPRGVTLDS
WIRVWAGLALANGLAFHQVLDTSLPAKFFLFILLSVIPALCALRGAQLWADFTSRLIVQD
LWISERLLPKRLSVRQFRLVLRHGIPQLVMLLVFGYILGVMGMLTYLGMILISLFHSRRI
GKVNENFNARIPWIKGLHWAYWSPLQVVFLMAMVAATLACQKFLPAIPWTSLNTLH