Protein Info for PFLU_RS06775 in Pseudomonas fluorescens SBW25

Annotation: hemolysin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 PF00353: HemolysinCabind" amino acids 130 to 159 (30 residues), 22.3 bits, see alignment (E = 1e-08) amino acids 164 to 191 (28 residues), 23.9 bits, see alignment (E = 3.4e-09) amino acids 203 to 231 (29 residues), 19.8 bits, see alignment (E = 6.3e-08) PF14891: Peptidase_M91" amino acids 286 to 485 (200 residues), 109.9 bits, see alignment E=1.8e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1373)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KBM7 at UniProt or InterPro

Protein Sequence (485 amino acids)

>PFLU_RS06775 hemolysin (Pseudomonas fluorescens SBW25)
MPPSPHPSASNHPSDPPDAPRTQTQRKMLVDDGNLRAGQLLTQGLKNPERPETLANILYL
ETGEKSDQIHISQRPDGQLYAQVNGRDYTFNTGDGHSNVPTFLHIKTGAGDDRITIDPTV
TVPVEIEAEDGDDVIQAGGGNTSIYGGRGNDHIRLGSGIGYAEGNEGDDTIIGGPGHAVM
YGNNGNDRLYASHGPNSKHSHLDGGTGDDKLYAGDGYSVLNGGQGDDTLVGYTHTTFYTG
EGRDTVVTNTTQARIYAQETDRLIGTQGSTVTYVKSSDAGRLAFVIDGAPDFIQRVEDDL
ALLRASPQGQKMLEALDKAAVQNGAPVYIVPFAESNDYYDYWNTDLQTLKDAHQLTYEPN
APMYGFIKDGVAGARANRATISYNPAHIYEGGDLLLPLLLLYHEMAHAWNGANGTFLPGL
SDPTAAHPELPGPPNSEQQAVGLATNAPPFDFDNDPSTPPTSTNPAPFTENSLNHEMGTP
LRQRY