Protein Info for PFLU_RS06515 in Pseudomonas fluorescens SBW25

Annotation: YchJ family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 PF17775: UPF0225" amino acids 30 to 127 (98 residues), 97.8 bits, see alignment E=5.6e-32 PF02810: SEC-C" amino acids 136 to 152 (17 residues), 33.5 bits, see alignment (E = 3.1e-12)

Best Hits

Swiss-Prot: 100% identical to Y1319_PSEFS: UPF0225 protein PFLU_1319 (PFLU_1319) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K09858, SEC-C motif domain protein (inferred from 100% identity to pfs:PFLU1319)

Predicted SEED Role

"UPF0225 protein YchJ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K7J3 at UniProt or InterPro

Protein Sequence (156 amino acids)

>PFLU_RS06515 YchJ family protein (Pseudomonas fluorescens SBW25)
MSTSICPCGSGNLLDACCGHYHAGHPAPCATALMRSRYSAYVLGLVDYLVATTLPAQQAG
LDRHAIGAWSAQSTWLGLEVESSEVFGGQPEHAFVTFTARWHDSTGEHSHREQSSFVQND
GRWYFIDPTVEVKVGRNDACLCGSGQKFKKCCSSYL