Protein Info for PFLU_RS06490 in Pseudomonas fluorescens SBW25

Annotation: ligase-associated DNA damage response exonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 TIGR04122: putative exonuclease, DNA ligase-associated" amino acids 4 to 328 (325 residues), 485 bits, see alignment E=4.1e-150

Best Hits

KEGG orthology group: K07577, putative mRNA 3-end processing factor (inferred from 100% identity to pfs:PFLU1313)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K7I8 at UniProt or InterPro

Protein Sequence (334 amino acids)

>PFLU_RS06490 ligase-associated DNA damage response exonuclease (Pseudomonas fluorescens SBW25)
MDLVIARPEGLYCPAGDFYIDPWRPVERSVITHAHGDHARTGNQHYLAAAPGEGILRSRL
GQDINLQTLAYGEKLLHHGVTLSFHPAGHVLGSAQVRLEYQGEVWVASGDYKVEPDGTCA
PFEPVRCHTFITESTFGLPIYRWQPQAQIFAGINDWWQANIAAGKASVLFCYSFGKAQRI
LHGIDASIGPILSHGAVEPLNRVYREAGIYIPETLYAGDFKKTDPLLRQALIIAPPSAGG
SSWIKRFGDYSDAFASGWMRLRGTRRRRGVDRGFVLSDHADWPGLLWAIEQTGAERVMVT
HGSVGVLVRHLREKGLDAMGFTTEYGDDEEEASA