Protein Info for PFLU_RS05970 in Pseudomonas fluorescens SBW25

Annotation: glucan biosynthesis protein D

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 541 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF04349: MdoG" amino acids 43 to 530 (488 residues), 600.1 bits, see alignment E=1.9e-184

Best Hits

Swiss-Prot: 100% identical to OPGD_PSEFS: Glucans biosynthesis protein D (opgD) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1207)

Predicted SEED Role

"Glucans biosynthesis protein D precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KDR8 at UniProt or InterPro

Protein Sequence (541 amino acids)

>PFLU_RS05970 glucan biosynthesis protein D (Pseudomonas fluorescens SBW25)
MHRRNLLKASMAIAAYTGLSASGLLAAQAWAGNRAADGKAVAFDFESLKAQAKQLAGTAY
KDTRQVLPPTLATMTPQNFNAIGYDGNHSLWKELNGQLDVQFFHVGMGFKTPVRMHSVDP
KTREAREVHFRPSLFNYEKTTVDTKQLTGDLGFSGFKLFKAPELDRHDVLSFLGASYFRA
VDSTGQYGLSARGLAIDTYAKKREEFPDFTQFWFETPDKNATRFVVYALLDSPSATGAYR
FDIDCQANQVVMAIDAHINARTTIEQLGIAPMTSMFSCGTHERRMCDTIHPQIHDSDRLA
MWRGNGEWICRPLNNPAKLQFNAFADTDPKGFGLVQTDHEFASYQDTVDWYSKRPSLWVE
PTTAWGEGSIDLLEIPTTGETLDNIVAFWTPKKPVAAGDSLNYGYKLYWSALPPVSTPLA
QVDATRSGMGGFTEGWAPGEHYPEVWARRFAVDFKGGGLDRLPAGTGIEPVVTCSHGEVK
DFSVLVLDNIKGYRILFDWYPTSDSVEPVELRLFIRTQDRTLSETWLYQYFPPAPEARKY
T