Protein Info for PFLU_RS05890 in Pseudomonas fluorescens SBW25

Annotation: recombination regulator RecX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 155 PF02631: RecX" amino acids 33 to 149 (117 residues), 109 bits, see alignment E=1e-35

Best Hits

Swiss-Prot: 100% identical to RECX_PSEFS: Regulatory protein RecX (recX) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K03565, regulatory protein (inferred from 100% identity to pfs:PFLU1190)

Predicted SEED Role

"Regulatory protein RecX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KDG1 at UniProt or InterPro

Protein Sequence (155 amino acids)

>PFLU_RS05890 recombination regulator RecX (Pseudomonas fluorescens SBW25)
MTVVLDTLVAVRRTAMDLLARREHGRVELTRKLRQRGAEPEMIETALDRLTEEGLLSESR
YLESFVSYRARSGYGPARIREELSQRGLQRADIDLALRECGISWQAQLEDTWRRKFSGHL
PIDARERAKQGRFLSYRGFSMEMISRLLSGRDMDD