Protein Info for PFLU_RS05865 in Pseudomonas fluorescens SBW25

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 PF05954: Phage_GPD" amino acids 107 to 315 (209 residues), 31.1 bits, see alignment E=7.4e-12

Best Hits

KEGG orthology group: K06905, (no description) (inferred from 100% identity to pfs:PFLU1185)

Predicted SEED Role

"FIG032563: Phage tail protein D"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KDF6 at UniProt or InterPro

Protein Sequence (336 amino acids)

>PFLU_RS05865 hypothetical protein (Pseudomonas fluorescens SBW25)
MAQGFTPIVEFYGANAALLNQRIMHWSHTDAAGIESDRLELTLNIEGLEGLPSLSGKVGM
RVGYSESGLVEKGEFVITQRTPVLFPMRLMIVATAAPFSVGDPHGYRQRRSASYGPTTLG
ALFRQLVGRHGFSPRVAPSLEGIPIAHIDQSNESDMAFITRLARRYSAVTKPFNELYVLA
EAGQVKSLSLQQLPEVKLSVTQDNRPGDHAFITATLNDNARSKYGGSRVTWWDVAGGRQH
VVEIGVAPFKTVRQRCQNEEEARAVAEGELRRVGREGLELLIDCPGNPLLAAEGLLRLDD
TWPAYMQGQWSITKVINVGDPVTGYRSSITAGGLST