Protein Info for PFLU_RS05510 in Pseudomonas fluorescens SBW25

Annotation: sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 604 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 267 to 288 (22 residues), see Phobius details PF19443: DAHL" amino acids 36 to 259 (224 residues), 191.2 bits, see alignment E=3.4e-60 PF02518: HATPase_c" amino acids 488 to 598 (111 residues), 72.1 bits, see alignment E=7.8e-24 PF14501: HATPase_c_5" amino acids 490 to 582 (93 residues), 24.4 bits, see alignment E=3.5e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1112)

Predicted SEED Role

"sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K8X9 at UniProt or InterPro

Protein Sequence (604 amino acids)

>PFLU_RS05510 sensor histidine kinase (Pseudomonas fluorescens SBW25)
MTLSRRRTSQFLLSLMTLLLASILVFLYVKSSRDQTATYTQSRDLIRQLQQLNAQWDSEV
LKARIAVTHNYDPLVTPLREMTRLWADLQSHPTYHAPEDLSRWQATLEGYQAAIQEKARL
VDQFKSHNAVLRNSLAFLPTAEDDIQAQFSRYDEDGRRQLQSVATDTYDLLLSSLEFAQV
TSDERAADILVGLGKLAVNKEQLPTEFQAPVEILSKHIELILREQPLVNNLLERIAAIPV
ADRLDELTHYLNQDQQTADLVDQKYHRYLLVFATLLVVLLLYLAVRLLRSFAEINRVNRA
LQAANETLEQRVERRTQQLKDAQSELLDSARQAGMAEIATNVLHNVGNVLNSVNISADMV
ARKLRSSKAQGLGKAMQLINEHQGDLGTFLTQDEKGKLLPGYLNQLVEAIAVEQQGMTDE
LAQLSKSVDHIKDIVSTQQSYAGASTLLEPVHISVLMEDALRMNAGALSRHNVTVVKHYA
QVPEILADKHRLLLIMVNLISNAKYAMSNLSDRPRQMTLRVEQRDDDTLQISVKDDGEGI
PAENMTRIFTHGFTTRKEGHGFGLHSCALAAVEMNGQLTAHSDGPGRGAVFTLTIPLTLA
GSPA