Protein Info for PFLU_RS05400 in Pseudomonas fluorescens SBW25

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 39 to 61 (23 residues), see Phobius details amino acids 73 to 94 (22 residues), see Phobius details amino acids 107 to 127 (21 residues), see Phobius details amino acids 138 to 155 (18 residues), see Phobius details amino acids 176 to 199 (24 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU1088)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K7I4 at UniProt or InterPro

Protein Sequence (207 amino acids)

>PFLU_RS05400 hypothetical protein (Pseudomonas fluorescens SBW25)
MKRFVAAAALAGWAGLAIQQYLIFYSRWTSGASLLGGLINFFSFFTVLTNTLAVVVLSYA
WVNRDSAAKQFFLAPRVSSGIAVSIVVVSLAYNLLLRHLWSPSGFQFIADELLHDVMPVL
FLIYWWRCVPKGHLRFRHIGAWVIYPLVYFAYALLRGDLLGQYQYPFIDVSTLGYPQVFV
NAGGILLGFVLIALAVVGLDRLIKPRT