Protein Info for PFLU_RS05355 in Pseudomonas fluorescens SBW25
Annotation: extracellular solute-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K02055, putative spermidine/putrescine transport system substrate-binding protein (inferred from 100% identity to pfs:PFLU1079)Predicted SEED Role
"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) or Sex pheromones in Enterococcus faecalis and other Firmicutes (TC 3.A.1.5.1)
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See C3K7H5 at UniProt or InterPro
Protein Sequence (391 amino acids)
>PFLU_RS05355 extracellular solute-binding protein (Pseudomonas fluorescens SBW25) MITLRVLGTSVTLLECLRVRAEQELGIRLVYQVHDVEQAQRIAVMQPESYDLYDQWFHNV DFVWPARAIQPIDTRRIALWHEINDLPKRGRLSPNDRLGSGSVPSERLFVQHDGSLGSTV TERISMLPLTHNADSFAYRPERLPEGFCHGNESWGWLLDPAWRARTALQSDAAIGALDAA LAVQGAGLATFKDIGNMSIEEIDVLADILVRKQKEGHFAAFWSDDEEAAQLMLSPSIDIQ SLWSPTLMRLHRAGVKYRLAVPSEGYRAWFGGVSLSRHAKGPVLDAAYAYLNWWLSGWPG AVMARQGYYIGNPARSRDHLSSAEWDYWYAGKPAREELLGSDGLPLIDIGEMRDGGSYEQ RMGHIAVWNSVMDEHNYLVRRWGDFMRARGG