Protein Info for PFLU_RS04645 in Pseudomonas fluorescens SBW25

Annotation: YraN family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 123 TIGR00252: TIGR00252 family protein" amino acids 7 to 122 (116 residues), 121.1 bits, see alignment E=1.3e-39 PF02021: UPF0102" amino acids 13 to 103 (91 residues), 88.8 bits, see alignment E=1.3e-29

Best Hits

Swiss-Prot: 80% identical to Y4685_PSEPF: UPF0102 protein Pfl01_4685 (Pfl01_4685) from Pseudomonas fluorescens (strain Pf0-1)

KEGG orthology group: K07460, putative endonuclease (inferred from 80% identity to pfo:Pfl01_4685)

Predicted SEED Role

"Predicted endonuclease distantly related to archaeal Holliday junction resolvase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (123 amino acids)

>PFLU_RS04645 YraN family protein (Pseudomonas fluorescens SBW25)
MPERSSAQSGKDAELQALKYLQHQGLRLLAQNWLCKRGELDLVMLDGDTVVFVEVRYRKH
AQWGGALASIDGRKRQKLILAAQFFLQKEHRWADAPCRFDVVALESTPSGQADLNWLKDA
FDS