Protein Info for PFLU_RS04615 in Pseudomonas fluorescens SBW25

Annotation: paraquat-inducible protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 transmembrane" amino acids 50 to 69 (20 residues), see Phobius details amino acids 97 to 122 (26 residues), see Phobius details amino acids 143 to 162 (20 residues), see Phobius details amino acids 174 to 193 (20 residues), see Phobius details PF04403: PqiA" amino acids 46 to 201 (156 residues), 173.9 bits, see alignment E=1.1e-55

Best Hits

KEGG orthology group: K03808, paraquat-inducible protein A (inferred from 100% identity to pfs:PFLU0928)

Predicted SEED Role

"Paraquat-inducible protein A" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KBX5 at UniProt or InterPro

Protein Sequence (214 amino acids)

>PFLU_RS04615 paraquat-inducible protein A (Pseudomonas fluorescens SBW25)
MNPPPTASELNLCLCHSCGLSADISTGAPECQRCDAPLHRRKVNSLTRTWAYMLTALAFY
VPANLLPVMNTTMLGSGADSTIMSGVLEFWEHGAWDIALIIFIASIAVPGIKFVSLMLLL
VTVQRNSRWARKERSKLFRFVELIGYWSMLDVIVVALVAALVKFQALGTIEPRLGILFFG
LVVVFTMLAAMSFDPRLIWETPHTKDTSDDVTHP