Protein Info for PFLU_RS03695 in Pseudomonas fluorescens SBW25

Annotation: DUF1365 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF07103: DUF1365" amino acids 5 to 249 (245 residues), 252 bits, see alignment E=3e-79

Best Hits

KEGG orthology group: K09701, hypothetical protein (inferred from 100% identity to pfs:PFLU0746)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KDD4 at UniProt or InterPro

Protein Sequence (269 amino acids)

>PFLU_RS03695 DUF1365 domain-containing protein (Pseudomonas fluorescens SBW25)
MNSALYSGWIAHRRFTPKAHAFRYRIGLLYLDLSEEQQVLGLSPLAGRSRLAPFGFRQQD
YLREFTRTGMSLSDAVRQEVGKALGRTPQGVICLLTQARSWGLAFNPVSFFYCFEADGRL
AAILCEVTNTPWRERYHYVLPAQALSADEHQHFAVAKAFHVSPFLPRDLEYRMSFSPPAA
KLGVHMADWQGTQKVFDATLSLQKETLNRASLHRYLWRFPWMTAKTCLAIYWQATRLLLK
RTPIFSHQAADGASRTAVGYTKDRRHEIP