Protein Info for PFLU_RS03360 in Pseudomonas fluorescens SBW25

Annotation: paraquat-inducible protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 transmembrane" amino acids 60 to 80 (21 residues), see Phobius details amino acids 106 to 133 (28 residues), see Phobius details amino acids 154 to 172 (19 residues), see Phobius details amino acids 178 to 200 (23 residues), see Phobius details PF04403: PqiA" amino acids 57 to 210 (154 residues), 164.9 bits, see alignment E=6.5e-53

Best Hits

KEGG orthology group: K03808, paraquat-inducible protein A (inferred from 100% identity to pfs:PFLU0677)

Predicted SEED Role

"Paraquat-inducible protein A" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KAJ3 at UniProt or InterPro

Protein Sequence (219 amino acids)

>PFLU_RS03360 paraquat-inducible protein A (Pseudomonas fluorescens SBW25)
MPDPVDALEVSDLPLDDLVACHECDLLMRKPVLALGEKAQCPRCGYELYAHRHNVVERSL
ALVLAALLLYIPANFLPIMQLNLLGQSSEDTVWSGVVGLFDTGMQGVAVVVFLCSMGIPL
LKLLCQLAVLLSIRWNIGRSYGLLLYRIYHHMKDWGMLEVYLMGVLVAIVKLADMASITV
GLGLVCFVSLLMVQVLLEVVMSPHQIWQALSGEDDHAGD