Protein Info for PFLU_RS02910 in Pseudomonas fluorescens SBW25

Annotation: DUF4329 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1536 transmembrane" amino acids 1391 to 1397 (7 residues), see Phobius details PF14220: DUF4329" amino acids 26 to 163 (138 residues), 33.7 bits, see alignment E=1.7e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU0589)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K5W0 at UniProt or InterPro

Protein Sequence (1536 amino acids)

>PFLU_RS02910 DUF4329 domain-containing protein (Pseudomonas fluorescens SBW25)
MENTPVNPPASRAELPPLSPPFVTPDDAARWAHERIARHSRDREYGGAIFKRGGRFYATE
PVPDQHVMFDHTLILPTDKNGDFVLPEGYMGEAYYHSHPLAPDEVARQNPGMTGSQVVIF
QSLFSIPDMRFIVEHRKTARAHYLSGPNGSLLKYVSSDSTQEQTLYQQWTGKLPIEQSSV
FEHLIWLLAEAGELRVIEPIAEWGGVRGKVTRAWKVGKPVALPGTVREQPAFTQVFGRAE
LAVLSALANAPTAVPARTMGVVLKHTQSEGYVATYPQATGQPLFALEGLFPKRPDGKPRL
PSQLRLEAIYYTSRPDETAFPKREPWLYAHFFTPAEMVAAITQSRLTAGIQDKARGLALY
MKAEDGALLRFKLPGLAEHTRLALVQSDGVLNDNGAQAALLAGTLRPREYVRRVLAAGDL
SVVQPGELWRYEGLVDDRSTLLTSFYEVTLSRSFLSAVDAAVHAHEQIGHRRDRYYGGYL
LKGEDGRFVITEPLESDANPFDKPLFFPAGGKGPLIPPELYQLHGRYGSHPALSMVDPAW
VEQRGWTRDDAMINMQAFADDEIREVIRQKRVAFLSGSQGCLLSYTPNSSSHEQVLLANV
APQAGGSRIRQHLSSGLITPTQWVTRLAEAGDFKVIEDNALWGPRSVVYSDWTPNFSYAP
RSGAPDYATFGALFGSADEAARNLHARVHGRSLAHQSCFSFILRHPKSDEFVASQVVGVS
ARYALFNLNSVFASSEKPGDFRFPEGFVLHALFRSQQWQPTGLGAADSWLARYFVQPGEL
YAALYDAKRRGEKYNDGQYLPIYFSTDEGALLRYVSLPFQLGGGGPLERNLEDTIAQLNS
GAKTPVEFVRETAKRGQLTVLRTSQYWDKEGLVSPDWNGYSAMIRRRLGPTFASADDAAR
HAQALVGTVRQRAYGGVVLRLANGAFTATDPLAVPPQGFARNWIYPDEAISQGLYPGGAS
IVARYRSRLDVEVELLLAAAQKAVYKSMLPSAVLAYLLLHETQVKREYLFGPDGSILSYQ
RTDSAEEAALRSRLAPLNAVRGDYADNFVEQQIRQGTLLPAEFVTEVAKAGDLRVISGSV
LWGPARLLVDTFVWNVEQPPAREIRQALADPLCSPLYTRAIDAVRALQLGSTTPAQLTFG
YVLKSAKKQRYMATAPLARESFVKLEQVWVAGQLPQGYVWDGLYLQAPTVQASSLEGEMA
KHFFWPQEVVNALSAAKRFGNGRVLTLYLMCADGALLQYDFERSALLFEMLNQAPRLRAS
LLDGSLKMQDYVRSLAARGDMQVWVRSPIWASVGKVGLDWSPKVVTGHSDSGPYAHLFCD
ALYFYADDAARSAQKRVGRFNGIEYLGAVLVPPDESGFVALEPVEDRSLPFPGSLARLFR
LAGFGLNLTNAYALYFYNIAAIQAFYKVIPSTTSLEAKDLRLLKRFASLDDWRRYVSIVR
TNLPVAESCYLVCREGALLKYVPGHTQEESALLGPGLAPDPSVLVERMRRVGNLSVLETD
DFWTRRGVLGPDWPHNGVQSLPDTDDTLYGRDKDEL