Protein Info for PFLU_RS02130 in Pseudomonas fluorescens SBW25

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 transmembrane" amino acids 30 to 51 (22 residues), see Phobius details PF03279: Lip_A_acyltrans" amino acids 76 to 306 (231 residues), 40.6 bits, see alignment E=9.1e-15

Best Hits

KEGG orthology group: None (inferred from 82% identity to pfl:PFL_0473)

Predicted SEED Role

"Lysophospholipid acyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (311 amino acids)

>PFLU_RS02130 glycosyl transferase (Pseudomonas fluorescens SBW25)
MSDSTKHWADREERGSYRLMKLTAFAAKVLGRRVLSPLLYGIVLYFFLFGRTARRSAWQY
QQRLAEWSGREELRPTHWKVFGQFMAFADSLLDKLDVWNGKLRLEQIEINDPAQLRGKLR
GGRGQMLVGAHLGNLEVCRALAEIGEQVTMNVLVHTKHAEQFNRLLGEAGATHLRLIQVS
ELDPATMLLLSQRLDDGEWLAIAGDRVPLHGGRTVRVDFLGHDAAFPQGPWLLAGLLKCP
VNLLMCLKHKSRYRLSIEPFAESIEWKRNTREQVIALWTAHYAARLGQFCLEAPQQWFNF
YPFWKTDDDAS