Protein Info for PFLU_RS01470 in Pseudomonas fluorescens SBW25

Annotation: cellulose synthase operon protein YhjQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 TIGR03371: cellulose synthase operon protein YhjQ" amino acids 70 to 311 (242 residues), 192.5 bits, see alignment E=4.3e-61 PF10609: ParA" amino acids 70 to 225 (156 residues), 33.3 bits, see alignment E=8.8e-12 PF13614: AAA_31" amino acids 71 to 112 (42 residues), 29.1 bits, see alignment 2.3e-10 PF06564: CBP_BcsQ" amino acids 71 to 308 (238 residues), 92.6 bits, see alignment E=7.2e-30 PF01656: CbiA" amino acids 72 to 292 (221 residues), 48.4 bits, see alignment E=2.3e-16

Best Hits

KEGG orthology group: None (inferred from 100% identity to pfs:PFLU0300)

Predicted SEED Role

"Cellulose synthase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K5V3 at UniProt or InterPro

Protein Sequence (321 amino acids)

>PFLU_RS01470 cellulose synthase operon protein YhjQ (Pseudomonas fluorescens SBW25)
MDFVHEFIEDDVEVLETPAVVRALPVIEAPSAPLLRLLEELSQGEADHLQPPEVVEGRDG
EVYSEHSSPNVVVVVSVKGGVGRSTLTAAIASGLQRQGRPALALDLDPQNALRHHLCLGL
DMPGVGATSLLNESWEALPERGFAGCRLVAFGATDHEQQQSLNRWLGQDDEWLSKRLAGL
KLNGQDTVIIDVPAGNTVYFSQAMSVADAVLVVVQPDVASFSTLDQMDSVLKPSLNRKKT
PRRFYVINQLDGAHRFSLDMAEVFKTRLGAALLGTVHRDPAFSEAQAYGRDPLDPTVNSI
GSQDIHALCRALLERIDSDLP