Protein Info for PFLU_RS00860 in Pseudomonas fluorescens SBW25

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 610 PF01935: DUF87" amino acids 132 to 417 (286 residues), 121 bits, see alignment E=1.6e-38 PF10412: TrwB_AAD_bind" amino acids 152 to 206 (55 residues), 22.4 bits, see alignment 1.1e-08 PF05872: HerA_C" amino acids 431 to 535 (105 residues), 26.1 bits, see alignment E=7e-10

Best Hits

KEGG orthology group: K06915, (no description) (inferred from 100% identity to pfs:PFLU0171)

Predicted SEED Role

"Bipolar DNA helicase HerA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3KBH0 at UniProt or InterPro

Protein Sequence (610 amino acids)

>PFLU_RS00860 ATP-binding protein (Pseudomonas fluorescens SBW25)
MSDNDPTYLGVVNAVSGATLTVKLAESLDSGFAVIRGHTYRVGQVGSFVRIPQGYQDLFG
IVSEVGATAAPTQSDISGANSGRWMTVQLAGETVGGQFERGLSQHPNINDSVHLVIESDL
RRIYGSVGEDQVVIGHLASAENIEVRLSLDALVTRHSAILGSTGAGKSTTVASLLRSIIR
KGETLGSPGARILMLDIHGEYTKALEDVATVFSATPSQGQESLFVPYWALEAGELLDFIT
GGLSDAHEIAFTDKIAELKDKGIKAQPRAGIDSRTLTVDSPVPFSLKQLWYELIDFETTT
YLGVNRDEPALEELGDAETLVAPKYQVHAMGAKGPFTNTAAKGIRRPLNLLRSRLLDRRY
DFLLHPGDWEPELAGTVKNDLDKLLEGWLGHDKQITILDLSGVPSAVLTRLIGSILRIVY
EALFWSREKSEGGIERPLLIVMEEAHRYLGPDAGTVASEVVKRIAKEGRKYGVGAMVVSQ
RPAEVDETVLSQCGTIIALRLSNPVDRARVKGSLPDNLAGLMDLLPVLRTGEAIITGEAA
RLPVRCRIALPRQEHLPRSNDPKVTEAWARRRSAEGYDRVVASWRSQQTNAVVRKLEITR
SPIDNDPEEG