Protein Info for PFLU_RS00420 in Pseudomonas fluorescens SBW25

Annotation: endonuclease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 PF03372: Exo_endo_phos" amino acids 36 to 262 (227 residues), 68.2 bits, see alignment E=4.5e-23

Best Hits

KEGG orthology group: K06896, (no description) (inferred from 100% identity to pfs:PFLU0084)

Predicted SEED Role

"Endonuclease/exonuclease/phosphatase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See C3K6T4 at UniProt or InterPro

Protein Sequence (292 amino acids)

>PFLU_RS00420 endonuclease (Pseudomonas fluorescens SBW25)
MRRWGTERVVGLHDPQVNEHHLESTGLPPDSRLRLLSFNIQVGISTEKYRHYLTRGWQHL
LPHNGRAGNLQKIGNLLNDFDLVALQEADGGSMRSGYINQVEHLAQLGAFPYWYQQLNRN
LGRLAQHSNGVLSRLKPTAIEDHPLPGPKGRGAILVRFGEGPEALVVVMMHLALGARTRT
MQLAYIRELIGGYKHQVLMGDMNTHANDLLLNSPLRDLGLLAPQAEATFPSWRPQRCLDH
ILLSPTLTLESVQVLAQPISDHLPVAVEIRLPGSLTADALPALSPGPRGPLA