Protein Info for OLJFJH_15920 in Erwinia amylovora T8

Annotation: TIGR01666 family membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 712 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 40 to 58 (19 residues), see Phobius details amino acids 66 to 85 (20 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 392 to 411 (20 residues), see Phobius details amino acids 417 to 433 (17 residues), see Phobius details amino acids 440 to 460 (21 residues), see Phobius details amino acids 466 to 482 (17 residues), see Phobius details amino acids 488 to 505 (18 residues), see Phobius details amino acids 511 to 533 (23 residues), see Phobius details TIGR01666: TIGR01666 family membrane protein" amino acids 12 to 705 (694 residues), 991.9 bits, see alignment E=1.5e-302 TIGR01667: integral membrane protein, YccS/YhfK family" amino acids 12 to 706 (695 residues), 908.9 bits, see alignment E=1.9e-277 PF12805: FUSC-like" amino acids 68 to 347 (280 residues), 353.8 bits, see alignment E=9.1e-110 PF13515: FUSC_2" amino acids 408 to 527 (120 residues), 99.9 bits, see alignment E=1.9e-32 PF04632: FUSC" amino acids 411 to 687 (277 residues), 31.8 bits, see alignment E=9.4e-12

Best Hits

Swiss-Prot: 66% identical to YCCS_ECOLI: Inner membrane protein YccS (yccS) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eam:EAMY_1389)

Predicted SEED Role

"Putative efflux (PET) family inner membrane protein YccS"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (712 amino acids)

>OLJFJH_15920 TIGR01666 family membrane protein (Erwinia amylovora T8)
MFMVIDNLRRRAYNSAWLYPIRITLALAGTAFLPWWLDQVIWTIPLTLGAVAAALTDLDD
RLSGRLRNLIITLICFCIASVSVELLFPYPWLFIIGLAMSGWGFILLGALGPRYATIAFG
ALLIAIYTMLGINLFPQWYVQPALLLLGAVWYNLLTLAGHLLFPIRPLQESISRCFYLLA
GYLEAKASLFDPDLGDDDRQTLVDMAMANSQLVMQLNQAKASIQSRLRGDRGQRGTRRTL
HYYFVAQDIHERASSSHVQYHALREAWGDSDILFRFQRLLTLQAQACQQLSRTILLREPW
HHNPHFDRVFARLYAAMQRLASQQPGSSEVKAMNYLLNNLKAIDAQLATIESEQILAEGS
AQHNHTLSSEGLTGWSDIRLRLSRHLSPESPLFRHAVRLSLLLCTGYGLIQITDLNHGYW
ILLTSLFVCQPNYNATRRRLALRIIGTLAGIVLGLPLLWLVPSTEGQLILIVVSGVLFFV
FRHVQYAHATTFITLLVLFCFNLLGEGFEVAIPRIVDTLIGCGIAWLAVAFIWPDWHFRR
LPAVAGHSLYANCRYLDAIMLQYQQGKDNGLDYRIARRDAHNGDAELASVVSNLSVENKA
GLALRETAFRLLCLNHSFLSYISALGAHREKLENAALLQLMDDTVSYVNDVLHTETVDAN
KTKQMMDSLAARIQQSETDTETKEPLVLQQLGLLVALLPEIAKLKNDLSLRG