Protein Info for OLJFJH_12345 in Erwinia amylovora T8

Annotation: lysine transporter LysE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 54 to 80 (27 residues), see Phobius details amino acids 86 to 107 (22 residues), see Phobius details amino acids 120 to 145 (26 residues), see Phobius details amino acids 158 to 184 (27 residues), see Phobius details amino acids 196 to 214 (19 residues), see Phobius details PF01810: LysE" amino acids 31 to 211 (181 residues), 81.9 bits, see alignment E=2.2e-27

Best Hits

KEGG orthology group: None (inferred from 99% identity to eam:EAMY_2184)

Predicted SEED Role

"FIG00634746: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (215 amino acids)

>OLJFJH_12345 lysine transporter LysE (Erwinia amylovora T8)
VVGAGDFSAPHLNFSHMDLNLVGFIPALLPVALSPGASFTLVMNSALARGPRGLLNTLAG
TALGIYTHALLIGFGMTAVLVSSPAAYGLLKIVSIAWLLWLGSQLILSGCKAHNTESASA
LAVTLQGAWLANVLNPKAIMFYLTVVTQFAGSDGGMAHYLLLASVHIMVMTVWLVGISYA
LVFSARKANSLMLKKYVNIAGGIMLIFFSLFSLFH