Protein Info for OLJFJH_12045 in Erwinia amylovora T8

Annotation: Amylovoran biosynthesis protein AmsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 32 to 51 (20 residues), see Phobius details amino acids 85 to 86 (2 residues), see Phobius details amino acids 90 to 123 (34 residues), see Phobius details amino acids 128 to 145 (18 residues), see Phobius details amino acids 152 to 170 (19 residues), see Phobius details amino acids 176 to 201 (26 residues), see Phobius details amino acids 207 to 228 (22 residues), see Phobius details amino acids 256 to 276 (21 residues), see Phobius details amino acids 286 to 304 (19 residues), see Phobius details amino acids 324 to 371 (48 residues), see Phobius details PF14897: EpsG" amino acids 36 to 365 (330 residues), 102 bits, see alignment E=1.9e-33

Best Hits

Swiss-Prot: 100% identical to AMSC_ERWAM: Amylovoran biosynthesis protein AmsC (amsC) from Erwinia amylovora

KEGG orthology group: None (inferred from 100% identity to eam:EAMY_2248)

Predicted SEED Role

"Amylovoran biosynthesis protein amsC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>OLJFJH_12045 Amylovoran biosynthesis protein AmsC (Erwinia amylovora T8)
MAIYWIVSYSILVFCFFELAMINQASEAKTKILINYFFLIGVFALILFAGIRGPDSGMDD
SQYVGFFHDFSRQTGMTGYQAVANIYRYENFFMVLAWVASCFTHESYFFLLFISFIAVST
NAWVYKKYSPLILCSLCLYSAHLFINKDMNQIRFGLCSAFAIAFICSLVARNYLLALLFI
VLSTQSHSTGYTIVMIIPFFFIRERKYLPLVLVIASIPLGIIGGKKLFLDSLGIVPVLGE
RAASYSGTNFDTTSPVFGLANLKNIAFIGAFTLYYFRKGIMKEDRFVYILLIAYSIGAAV
RITFSDFSIFGGRVGNLFLHTEPLLFAFLMLRIRNLLLNFFMLFSITTYYLAYNTILSAQ
SIMGYSVAPLFRIFS