Protein Info for OLJFJH_11965 in Erwinia amylovora T8

Annotation: Multidrug resistance protein MdtC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1024 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 336 to 353 (18 residues), see Phobius details amino acids 360 to 384 (25 residues), see Phobius details amino acids 390 to 410 (21 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 463 to 490 (28 residues), see Phobius details amino acids 526 to 545 (20 residues), see Phobius details amino acids 853 to 871 (19 residues), see Phobius details amino acids 887 to 917 (31 residues), see Phobius details amino acids 950 to 970 (21 residues), see Phobius details amino acids 982 to 1008 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1008 (1005 residues), 1132 bits, see alignment E=0

Best Hits

Swiss-Prot: 100% identical to MDTC_ERWAE: Multidrug resistance protein MdtC (mdtC) from Erwinia amylovora (strain ATCC 49946 / CCPPB 0273 / Ea273 / 27-3)

KEGG orthology group: K07789, RND superfamily, multidrug transport protein MdtC (inferred from 59% identity to axy:AXYL_00556)

MetaCyc: 73% identical to multidrug efflux pump RND permease subunit MdtC (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-352; TRANS-RXN-353; TRANS-RXN-92

Predicted SEED Role

"Multidrug transporter MdtC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1024 amino acids)

>OLJFJH_11965 Multidrug resistance protein MdtC (Erwinia amylovora T8)
VKFLSLFIYRPVATSLLTLALVLSGLLGFRMLPVASLPQMDFPVIVVSASLPGASPETMA
SSVATPLERALGRIAGVSEMTSSSSLGSTEVVLMFDFDRDINGAARDVQGAINAAQSLLP
SGMPRRPSYRKVNPSDAPIMIMTLSSDTFSPGQLYDYASTQLAQRLSQIDGVGDVTIGGS
SLPAVRVDLNPQALFNQGVTLDAVRTTIANANVRRPQGAIDDRQQRWWLKTNDELHTAAE
YRPLVIRYHQGAAVRLQDVATVTDSVENVRNAGMSNARPAVLVVIRKSPQANVIDTIDRI
RDEVPQLRKTIPAAIQLEIAQDSSATIRASLHEVEQSLAVSVGLVVLVVFAFLRSGRATL
IPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTVASGFVVDDAIVVLENISRHVEAGLKP
LQAALLGVREVGFTVVSMSVSLIAVFIPLLMQGGIIGRFFREFAITLSVSIAISLVISLT
LTPVMCARLLRSSAPRQQPRRRGFGRMLLVVQQGYGRALHRVLDHARWALLVFVASLGLT
VYLFISMPKTFMPEQDTGRLMGFIQADQSTSFQAMRSKVEHFMRVVHADPAVESVVGFTG
GWETNSGAMFIALKPLSTRGDNAQQVIARLRSKLAKEAGATLWLRAVQDIRIGARQSDGG
YQYSLLSDSLDDLRQWQPKIRRAFASLPELVDVNSDQQDKGAEMALTYDRTRMARLGIDV
ADVNGLLNNAFGQRQISTIYQPLNQYQVVMGVDARYAQDINALNQMYVTNHQGQPIPLSS
FASWQPANAPLSVEHEGLSAVSTLSFNLPEGVSLSQAAAAIDRSVIALGMPSSVRGSFSG
TAAVFEQTQSSQLWLILAAIATVYIVLGMLYESYVHPLTILSTLPSAGMGALLALKLFNT
PFSLIALIGILLLIGIVKKNAIMMVDFALQAQRQDGMPVREAIFQASLLRFRPIIMTTLA
AMLGALPLVLSSGDGAELRQPLGITIVGGLVVSQLLTLFTTPVVYLYMDKLRRKPRWRPV
PAQS