Protein Info for OLJFJH_09575 in Erwinia amylovora T8

Annotation: recombinase RecA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 355 TIGR02012: protein RecA" amino acids 6 to 325 (320 residues), 564 bits, see alignment E=5e-174 PF00154: RecA" amino acids 9 to 270 (262 residues), 474.4 bits, see alignment E=2e-146 PF08423: Rad51" amino acids 38 to 228 (191 residues), 35.5 bits, see alignment E=1.3e-12 PF06745: ATPase" amino acids 42 to 240 (199 residues), 33.3 bits, see alignment E=6.8e-12 PF21096: RecA_C" amino acids 273 to 327 (55 residues), 84.3 bits, see alignment 1e-27

Best Hits

Swiss-Prot: 98% identical to RECA_ERWT9: Protein RecA (recA) from Erwinia tasmaniensis (strain DSM 17950 / CIP 109463 / Et1/99)

KEGG orthology group: K03553, recombination protein RecA (inferred from 100% identity to eay:EAM_2640)

MetaCyc: 87% identical to DNA recombination/repair protein RecA (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"RecA protein" in subsystem DNA-replication or DNA repair, bacterial or DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (355 amino acids)

>OLJFJH_09575 recombinase RecA (Erwinia amylovora T8)
MAIDDNKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMG
RIVEIYGPESSGKTTLTLQVIAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQP
DTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA
GNLKNSGTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIFGELVDLGVKHKLIEKAGAWYSYNGDKIG
QGKANAGNFLKENPAIANEIDAKLRAMLLGNQDDKPDFVPAAHEVDAESEANEIL