Protein Info for OLJFJH_08890 in Erwinia amylovora T8

Annotation: Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 758 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF18364: Molybdopterin_N" amino acids 8 to 48 (41 residues), 57.7 bits, see alignment 1.3e-19 PF00384: Molybdopterin" amino acids 52 to 510 (459 residues), 162.1 bits, see alignment E=2.9e-51 PF01568: Molydop_binding" amino acids 626 to 746 (121 residues), 87.1 bits, see alignment E=1.3e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to eay:EAM_2769)

Predicted SEED Role

"Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.5.3)" (EC 1.8.5.3)

MetaCyc Pathways

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.8.5.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (758 amino acids)

>OLJFJH_08890 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C (Erwinia amylovora T8)
MTIKKVPHLAHWGAFSAVVAKGKLLRCEPFFADRDPSPMLNSIPELVYSDKRIRQPMVRR
SWLKSREKSDRTLRGREDFVAVDWETALDLVADENRRVRERYGASGIFSGSYGWSSAGRV
NHARTLVRRFYNLGGGGIDQQGNYSWGAAQFFLPYVIGTYLPLTGRVTDWPSVVEHCELF
IAFGGLALKNGQVASGGAGEHSLKPALLQLAAKGTPVINISPMRDDCPQFVNAEWIPIRP
NTDVALMLSLGYEIERLAAVDSAFLQSHCVGYPQLRAYLLGESDGQPKTPQWASRITAIP
AARIALLARQLCGKRSFITCSYSVQRAHRGEQPYWMMIALSSMLGQPGLPGAGFSFGHGS
MNSVGNPRTEGPSPLMSTGVNPIASQAIPVARISDMLLNPGAEYSFQGQSHTYPDIHLIH
WAGGNPFHHHQQLNRLVAGWQRPDTVVVQDIVWTAAAQMADIVLPVTTSLERNDIGGSSK
DRFVLAMHQAIAPRHQARNDFDIFADLAERLGYRDSYTEKRDEMAWIEYLYQQCALAHAG
KGIVFPAFETFWQQGHVEIPQPDKPWVFMADFRQDPFRHPIDTASGKIELFSETIAGYQL
TDFAPHPEWQPPQEWLGAEIGQRFPLHMISIQPHDRLHSQMDATPGVQANKIRGRETLSM
HPQDAALRGISDGDVIDVFNDRGHMQAGVRITDGVSPRVVLIATGAWFDPGFGKAWRNYD
RAGNPNVLTLDIGTSSLTQGPNAMSCLVEIRKATSDMD