Protein Info for OLJFJH_07295 in Erwinia amylovora T8

Annotation: UPF0719 inner membrane protein YjfL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 132 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 48 to 69 (22 residues), see Phobius details amino acids 75 to 97 (23 residues), see Phobius details amino acids 109 to 128 (20 residues), see Phobius details PF03994: DUF350" amino acids 4 to 130 (127 residues), 123 bits, see alignment E=4.6e-40

Best Hits

Swiss-Prot: 57% identical to YJFL_ECO57: UPF0719 inner membrane protein YjfL (yjfL) from Escherichia coli O157:H7

KEGG orthology group: K08989, putative membrane protein (inferred from 100% identity to eam:EAMY_0359)

Predicted SEED Role

"Membrane protein with DUF350 domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (132 amino acids)

>OLJFJH_07295 UPF0719 inner membrane protein YjfL (Erwinia amylovora T8)
MATLQLLLAFASYFFISCAMVLVFLFIYMRITPHNEWRLIKENNLAATYGFIGALLGYIV
PLASVAANSVNLLDYLLWGAVALVIQLLVFTVVRLFIRDISLRIEQNQRAAGLFLAAVSL
GVGILNAACMTY