Protein Info for OLJFJH_07290 in Erwinia amylovora T8

Annotation: putative endonuclease GIY-YIG superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 121 transmembrane" amino acids 13 to 29 (17 residues), see Phobius details PF01541: GIY-YIG" amino acids 9 to 81 (73 residues), 49.7 bits, see alignment E=1.9e-17

Best Hits

KEGG orthology group: K07461, putative endonuclease (inferred from 89% identity to epy:EpC_03700)

Predicted SEED Role

"FIG137864: putative endonuclease containing a URI domain" in subsystem CBSS-214092.1.peg.3450

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (121 amino acids)

>OLJFJH_07290 putative endonuclease  GIY-YIG superfamily (Erwinia amylovora T8)
MCPAAPAEWHLYIVRTAGGVLYTGITLDVARRFAQHQRGKGAKALRGKGPLELVFHCAAG
DRSLASKLEYCVKQLKRQQKLQLAEQQPLSLIQWLSDQSRLNGAEYSILPAMPLKASSAS
L