Protein Info for OLJFJH_02115 in Erwinia amylovora T8

Annotation: pyrroloquinoline quinone biosynthesis protein PqqF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 796 TIGR02110: coenzyme PQQ biosynthesis protein PqqF" amino acids 8 to 707 (700 residues), 497.6 bits, see alignment E=3.9e-153 PF00675: Peptidase_M16" amino acids 13 to 131 (119 residues), 80.8 bits, see alignment E=2.6e-26 PF05193: Peptidase_M16_C" amino acids 174 to 315 (142 residues), 36.4 bits, see alignment E=1.3e-12 PF22454: PQQ_syn_pqqF_N_2" amino acids 241 to 385 (145 residues), 190.1 bits, see alignment E=5.4e-60 PF22455: PqqF_C_3" amino acids 470 to 561 (92 residues), 34.1 bits, see alignment E=6.1e-12 PF22456: PqqF-like_C_4" amino acids 649 to 748 (100 residues), 86.9 bits, see alignment E=2.2e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to eam:EAMY_3078)

Predicted SEED Role

"Coenzyme PQQ synthesis protein F"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (796 amino acids)

>OLJFJH_02115 pyrroloquinoline quinone biosynthesis protein PqqF (Erwinia amylovora T8)
MQPQRRRLDNGLRVVLISDAQAVQAAALFQVDTGSHYEPDSWPGLAHLLEHLLFAGSCAY
ADDERLMAWLPARGGRLNATTQGSSTAFFFECDAGLLAPGLARLSDMLLAPLLAENAIRQ
EVATIDAECRLLAGQQDTLCNAAQSMAFAAHPWQRFHIGNAASFTGDWPALRLALQQFHQ
RYYHAANITLWLQGPQSPEALWQLARQYGSAFSAVGVPPPALPLLHYSSQPDMALQLAGS
PRLRLSFLLDRPRSNELTLLRQLLLDEAAGGLMATLRAHHLCDGARLLVPYHSAMQTLVS
VELALIDEQQATEVEGWVHHWLQRLTALTARQRQHYMRLADFQFARLSPMDQLREHAVGF
APPQVQQDDWPGFCARLSVARLARLWIGAQSLAQQCSVQGFRLRCAAQTRAPVTALIPAE
ALTFFCESQPDAQAALPAGQVALNHQRAGKGRAALLLSPLDELHAPWGVILQSRLRALAA
DCAHKGGDLSVSCQQGHWLIQLCGSPALMVRTLATLIRQLCEISPVMIAQGERQYQRQQQ
AQREGIAVRALIDALPALLRSSVYQSAGRRLPRLAWQAVLDGGDDALRQSLSQLLSAFPG
TINPPGRMQPEPLAPQPEYQVATISHDATLLRFCPLVENSTQCLAAWQLLALIYQPAFFQ
RLRVEQNIGYVVSCRFYQAAGRSGLLFALQSPHLSTGELSAHIDRFLPGMDDELAALSME
TVREKGAALLAQQRLAASDFQQECRQRWLAAQQSVPQPDEYVIQGLTPERLSDYHQRLLS
DRHNAWTLVGIPANRF