Protein Info for OKGIIK_16915 in Rhodanobacter sp. FW510-T8

Name: rfaB
Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13579: Glyco_trans_4_4" amino acids 23 to 170 (148 residues), 57 bits, see alignment E=9.5e-19 PF13439: Glyco_transf_4" amino acids 23 to 174 (152 residues), 102.2 bits, see alignment E=1e-32 PF13477: Glyco_trans_4_2" amino acids 30 to 125 (96 residues), 28.7 bits, see alignment E=4e-10 PF20706: GT4-conflict" amino acids 140 to 324 (185 residues), 28.3 bits, see alignment E=2.7e-10 PF00534: Glycos_transf_1" amino acids 199 to 345 (147 residues), 62.7 bits, see alignment E=9.6e-21 PF13692: Glyco_trans_1_4" amino acids 204 to 345 (142 residues), 43.6 bits, see alignment E=1.1e-14

Best Hits

KEGG orthology group: None (inferred from 61% identity to psu:Psesu_0426)

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>OKGIIK_16915 glycosyl transferase (Rhodanobacter sp. FW510-T8)
MSSIAVPAKLLTVVQLIPALDSGGAERSALEIARALVQAGHRSVVISAGGRLVEQLQAEG
SEHVTLDLGRKSLFTLARLGALRRVLRALKPDIVHARSRLPAWMGWWALKGMTPRPHFVT
TVHGLNSPGRYSAILLRGERVVAVSQTLRDYVLSHYRWLEPGRVRVIPRGIDPQAFPYGH
RPDEAWRKAFFAEFPVLAEAPLLTLPGRGTRLKGHHDAIELLVDLKRRGIEARLLLLGVI
EPGREAYVAELRELIQLRGMAAQVVMTPPRRDVRDIYAVSALVLQLSNRPESFGRTVIEA
LSLCRPVLGYAHGGVGELLAELYPAGRVPPGDRERLVERAAELLRVAPPISPLQSYRLSD
MQQATLALYDEVAAG