Protein Info for OKGIIK_16505 in Rhodanobacter sp. FW510-T8

Name: putA
Annotation: bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1113 PF18327: PRODH" amino acids 67 to 113 (47 residues), 54.4 bits, see alignment (E = 2.4e-18) PF14850: Pro_dh-DNA_bdg" amino acids 122 to 235 (114 residues), 158.1 bits, see alignment E=2.2e-50 PF01619: Pro_dh" amino acids 245 to 539 (295 residues), 328 bits, see alignment E=1.1e-101 TIGR01238: delta-1-pyrroline-5-carboxylate dehydrogenase" amino acids 590 to 1090 (501 residues), 691.9 bits, see alignment E=2.2e-212 PF00171: Aldedh" amino acids 632 to 1090 (459 residues), 372.1 bits, see alignment E=7.1e-115

Best Hits

KEGG orthology group: K13821, proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC: 1.5.1.12 1.5.99.8] (inferred from 72% identity to psu:Psesu_0170)

Predicted SEED Role

"Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)" in subsystem Arginine and Ornithine Degradation or Proline, 4-hydroxyproline uptake and utilization or Respiratory dehydrogenases 1 (EC 1.5.1.12, EC 1.5.99.8)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.5.1.12

Use Curated BLAST to search for 1.5.1.12 or 1.5.99.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1113 amino acids)

>OKGIIK_16505 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA (Rhodanobacter sp. FW510-T8)
MIWISPVRRLECRPGDTLAGPQAAPRSARFRDGPAYNPRFPSATADPRDLPVTQPILSPE
LPVDNIPARARITAAWLRDETEAVNDLLAQATLPPAEREQVIDLAAGLVARVRVRAKDQS
AVESFMRQYDLSSEEGVLLMCVAEALLRIPDKATADKLIRDKLGEADWKKHLGQSESLFV
NASTWGLMLTGRLVNLAEETRHDFTGALKRLVGRAGEPAIRLAVRQAMRIMGHQFVMGQT
IDEALDRCAKKEYAVYRYSYDMLGESALTAETAERYQEDYRRAIAALGARGPFANHTDAP
SISVKLSALHPRYEVAKRELARRQLTEKLLELSQLAMKHGIALSVDAEEADRLELSLDII
GDVFMHPSLAGWNGLGIVVQAYSKRTPFVIDWLIETARSSGRRWYARLVKGAYWDAEIKR
AQEQGLAGYPVYTRKPNTDVSYLACARKLFDAGSEFIYPQFATHNAHTIAAVHHIAHGRP
FEFQRLHGMGTDLYAEVIGKDNLNVPCRVYAPVGTHEDLLPYLVRRLLENGANTSFVNRV
VDETLPVRELVADPCETVRRFASIPHPRIPLPVNLYGENAALAQHPNFVSRKNSMGVNFS
NDNELKAMADAVNANAGPWTAGPLVPGAAASGPTVQVTNPADRRQAVGRYVSADGATVDK
ALANAVAAQPGWDRLPAASRAAILEHAAEQLEARRGEFIALCVREAGKSLPDAIAEIREA
ADFLRYYAAMARRLFGQPEQLPGPTGESNQLFLNGRGVFVCISPWNFPLAIFLGQVSAAL
AAGNSVIAKPAEQTSLIGHAAVKLLHEAGVPLDVLQYLPGDGATVGAALTRDPRVAGVAF
TGSTETAWAINRALAARNAPIAALIAETGGQNAMIADSSALPEQIVKDVIASAFQSAGQR
CSAARVLFVQEDIADKVTAMLAGAMGELKVGDPGQLSTDVGPVIDEDAKKILVDHAARMD
KEAKKIGEVALDPAATGHGTFFAPRAYEIGSLATLTREVFGPVLHVVRWKGSELAQVVEQ
INATGYGLTLGVHSRINDTVDYIASHARVGNCYVNRNQIGAVVGVQPFGGENLSGTGPKA
GGPHYLLRFAGERTLTVNTTAAGGNASLLTIGE