Protein Info for OKGIIK_16395 in Rhodanobacter sp. FW510-T8

Annotation: Lytic transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 678 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF14718: SLT_L" amino acids 409 to 468 (60 residues), 48 bits, see alignment 1.2e-16 PF01464: SLT" amino acids 489 to 598 (110 residues), 96.9 bits, see alignment E=5.9e-32

Best Hits

Predicted SEED Role

"Soluble lytic murein transglycosylase precursor (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (678 amino acids)

>OKGIIK_16395 Lytic transglycosylase (Rhodanobacter sp. FW510-T8)
MSVSFPPRRILLVWLLVAGWLLTGVLAQAAEPVDAQRAAFKQAYAAAQQGGDGWRGLAGG
LRDYPLYPYLPAAALQHDIRQVDRASVEAYLRQYPDWIPAADLRRAFLLELAQRQDWSGF
LALYQPGLGDALSCNALQARLAGGAALDFERDLAELWTRPSLPDACDPVLRAAHDQGLLT
DARLWTRIDRAADAGQAGTIASLADWLGEPGRRSAQQLALALRDPAAALAAAAGWPDQPR
QREAATLALTRLARRQVDDADTAWQQLRSHFAFSEAQRDRILRTLALFHATDFDDGALAR
LIALPAAAQSEGTREWRVRVALARRDWSAVLAGIDAMPADQQQDGEWRYFRARALAALNR
DDEARRLFEAQAGQATFFGFLSADRLDRPYAICPLPPTDDPQREQALLANPGLRRAFELY
AVDLPKPARREWARALQDADPTTQRAAVVLANRRGWYDRAVFVLNSGEALRLYELRFPLA
SQDGLVPQAEQAGVEPAWAYGILRAESAWVSDAQSGADARGLMQLLPSTAALVAKRNGLD
WGGGDTLYDPVTNIALGTRYLAQMAARFNGSPWLASAAYNAGPNKVEQWLAARGTLAPDL
FVATMPFKETREYVARVMAFSVIYDWRLSGGPVVSLADRMSAIGQPYALPTAATVRRPVD
CPPAVAPAAAASAAAATP