Protein Info for OKGIIK_16215 in Rhodanobacter sp. FW510-T8

Name: gspE
Annotation: type II secretion system ATPase GspE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 577 PF05157: MshEN" amino acids 57 to 163 (107 residues), 63.8 bits, see alignment E=1.6e-21 TIGR02533: type II secretion system protein E" amino acids 95 to 574 (480 residues), 682 bits, see alignment E=2.2e-209 PF00437: T2SSE" amino acids 200 to 466 (267 residues), 356.1 bits, see alignment E=1.1e-110

Best Hits

Swiss-Prot: 70% identical to GSPE_XANCP: Type II secretion system protein E (xpsE) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K02454, general secretion pathway protein E (inferred from 72% identity to sml:Smlt0687)

Predicted SEED Role

"General secretion pathway protein E"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (577 amino acids)

>OKGIIK_16215 type II secretion system ATPase GspE (Rhodanobacter sp. FW510-T8)
MSAVIEPAVGGSGRVVDDREAEVCAWLVARGRLKDGDLVRARRLHEESAEGTLTTLMARL
GLVSERDLAEAWAELLQVPLLAARDAPELPPAELELSLRFLKQQHVVPVQDGEHGLALIV
ADPADPYPLQAVELAAGRPVALRVGLRSEIDGLIERYYGSGRSAMGTIVENLDGSAAEED
DVEHLRDLASEAPVIRLVNLILQRAVEQRASDVHIEPFENRLKVRYRIDGVLHEVEAPPS
SSTAAVISRVKIMARLNIAERRLPQDGRIQLRVQGKELDLRVSTVPTSFGESVVMRILDR
ESVVFDFASLGFTDSFQSRFVEVLNRPHGILLVTGPTGSGKTTTLYTALSRINTPDVKII
TVEDPVEYQIEGINQIQVKPQIGLDFAGALRSIVRQDPDVIMIGEMRDLETCRIAIQSAL
TGHLVLSTLHTNSAAGGITRLLDMGVEDYLLGSTVNGILAQRLVRRLDPATAVPYEPSPE
VIAQFELEKYADGKPIRLWKPGSSTANPSGYRGRQAIMEFLVMSDPLRRLVMQKADAGEI
EKQARAEGMRTMYEDGIAKSLAGVTTLEEVLRVTQEG