Protein Info for OKGIIK_15505 in Rhodanobacter sp. FW510-T8

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 PF13191: AAA_16" amino acids 18 to 204 (187 residues), 58.1 bits, see alignment E=2.5e-19 PF13401: AAA_22" amino acids 40 to 207 (168 residues), 39.6 bits, see alignment E=9.5e-14

Best Hits

KEGG orthology group: None (inferred from 54% identity to nit:NAL212_0224)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (393 amino acids)

>OKGIIK_15505 AAA family ATPase (Rhodanobacter sp. FW510-T8)
MDPYSNPFNPGAGVSPPELAGRSEVLSQAITALERTKRGRHAKSLMILGLRGVGKTVLLN
EIAREASERGYLTEQIEARDGEDLRQLLIHTLRKVLLQLDRSAQAIEAVKRSLRVLRSFI
GNVTASAGGVDVTLGVDPEAGQADSGDLEADIKDVLVAAARAAQAASRPVALLIDELQYV
PRAELGALIRAIHAINQAGLPLLLFGAGLPQLAGQAGDAKSYAERLFDFPRLDRLQEEDA
YKAIREPVEEEGARIEDSALAEIYVQTRGYPYFLQEWGYNAWNAAADKVITVDAATAATD
QSIRKLDQSFFRVRFDRLTPLERDYMRYLAEFGEGPQRSSDVAKAMGRGGSSLGPTRDNL
IKKGMIYAPEHGLIAFTVPLFDEFMRRVMPLSP