Protein Info for OKGIIK_15405 in Rhodanobacter sp. FW510-T8

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details transmembrane" amino acids 68 to 94 (27 residues), see Phobius details amino acids 106 to 128 (23 residues), see Phobius details amino acids 136 to 158 (23 residues), see Phobius details amino acids 179 to 203 (25 residues), see Phobius details amino acids 239 to 259 (21 residues), see Phobius details PF00528: BPD_transp_1" amino acids 89 to 261 (173 residues), 75.6 bits, see alignment E=2.1e-25

Best Hits

Swiss-Prot: 33% identical to Y1216_PYRHO: Probable ABC transporter permease protein PH1216 (PH1216) from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)

KEGG orthology group: K10190, lactose/L-arabinose transport system permease protein (inferred from 74% identity to psu:Psesu_1286)

Predicted SEED Role

"N-Acetyl-D-glucosamine ABC transport system, permease protein 2" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (273 amino acids)

>OKGIIK_15405 sugar ABC transporter permease (Rhodanobacter sp. FW510-T8)
MSPRLAKALVNGLLIGLAAVALFPLLWMLSVSFMAPGEAGALPPPLLPAHPGWANYRELF
LRAGMGRYLLNSLLVSGAITALSLVFNLMAGYAFAKLRFAGRERLFRALLGALVIPAQVA
MLPLFLLLKYAGLVNSYAGVVMPAMATVFGIFLVRQYARSIPDELLEAARIDGAGEWRIF
ARIVLPLLKPIIATLAIFSFLAAWNDFMWPLIVLTGQEHYTLPIGLASLAREHAQDSELM
MAGSVVTVLPVLLLFLSLQRYYLQGLLLGSVKG